Constant Field Values

Contents

• org.nmdp.*

org.nmdp.*

org.nmdp.ngs.fca.AbstractLattice<T extends Partial>

Modifier and Type	Constant Field	Value
protected static final String	LABEL	"label"

org.nmdp.ngs.feature.VcfFile

Modifier and Type	Constant Field	Value
public static final int	BUFFER_SIZE	2048
public static final String	CONTIG	"contig"
public static final String	FILTER	"FILTER"
public static final String	FORMAT	"FORMAT"
public static final String	INFO	"INFO"

org.nmdp.ngs.feature.VcfFile.Info

Modifier and Type	Constant Field	Value
public static final String	NUMBER	"Number"
public static final String	TYPE	"Type"

org.nmdp.ngs.feature.VcfFile.Metadata

Modifier and Type	Constant Field	Value
public static final String	CHARACTER	"Character"
public static final String	DESCRIPTION	"Description"
public static final String	FLAG	"Flag"
public static final String	FLOAT	"Float"
public static final String	ID	"ID"
public static final String	INTEGER	"Integer"
public static final String	STRING	"String"

org.nmdp.ngs.feature.parser.FeatureParserConstants

Modifier and Type	Constant Field	Value
public static final int	BAR	19
public static final int	CLOSEANGLE	23
public static final int	COLON	13
public static final int	COMMA	12
public static final int	DEFAULT	1
public static final int	DIGIT	4
public static final int	DNA	28
public static final int	DOLLAR_SIGN	17
public static final int	DOT	15
public static final int	DOUBLEHASH	26
public static final int	EOF	0
public static final int	EQUALS	11
public static final int	HASH	21
public static final int	HAT	16
public static final int	IDENTIFIER	29
public static final int	IN_LITERAL	0
public static final int	INTEGER	24
public static final int	LETTER	7
public static final int	LOCATION	25
public static final int	LOWER	6
public static final int	MINUS_SIGN	10
public static final int	NONDELIMITER	30
public static final int	NUCLEOTIDE	8
public static final int	OPENANGLE	22
public static final int	PLUS_SIGN	9
public static final int	REAL	27
public static final int	SEMICOLON	14
public static final int	SLASH	20
public static final int	STAR	18
public static final int	TAB	3
public static final int	UPPER	5

org.nmdp.ngs.feature.parser.SimpleCharStream

Modifier and Type	Constant Field	Value
public static final boolean	staticFlag	false

org.nmdp.ngs.tools.FastaToFastq

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_QUALITY	40

org.nmdp.ngs.tools.FastqToSsake

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_INSERT_SIZE	500