org.nmdp.ngs.align

Class HspWriter

java.lang.Object

org.nmdp.ngs.align.HspWriter

public final class HspWriter
extends Object

High-scoring segment pair (HSP) writer.

Method Summary

Methods

Modifier and Type	Method and Description
static void	write(HighScoringPair hsp, PrintWriter writer) Write the specified high-scoring segment pair with the specified print writer.
static void	write(Iterable<HighScoringPair> hsps, PrintWriter writer) Write zero or more high-scoring segment pairs with the specified print writer.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

write

public static void write(HighScoringPair hsp,
         PrintWriter writer)

Write the specified high-scoring segment pair with the specified print writer.

Parameters:

hsp - high-scoring segment pair to write, must not be null

writer - print writer to write high-scoring segment pair with, must not be null

write

public static void write(Iterable<HighScoringPair> hsps,
         PrintWriter writer)

Write zero or more high-scoring segment pairs with the specified print writer.

Parameters:

hsps - zero or more high-scoring segment pairs to write, must not be null

writer - print writer to write high-scoring segment pairs with, must not be null