org.nmdp.ngs.hml.jaxb

Class Sso

java.lang.Object

org.nmdp.ngs.hml.jaxb.Sso

public class Sso
extends Object

Specifies an SSO (sequence-specific oligonucleotide) test that was done for this sample. Kit information and scores must be identified to allow for later test reinterpretation. For NMDP, a corresponding typing-test-names/typing-test-name structure is expected in this same HML document. Children: --------- Allows an OPTIONAL "property" element that may have nested/custom use data related to this typing-method. Attributes: ----------- - locus: locus for multi-locus targets (optional) - test-id: Test ID as registered with the test-id-source. - test-id-source: A formal or formal test registry location. For example, this could be the NCBI GTR (specified as "GTR"), NMDP for tests registered directly with NMDP (specified as "NMDP), etc. (required if test-id is used) - scores: The results of the SSO test, specified as one string (ex: "118111100181") NMDP allows the following test-id-source values: (Note that this may change in future versions) * gtr: ID of kit registered with the NCBI Genetic Testing Registry. (Preferred) * nmdp-refid: ID of kit registered with NMDP. The cardinal sequence numbers of the registered probes in the kit will determine the score order. * probe-name: Fully qualified probe name. If this attribute is used, the scores attribute must contain exactly one score. (ex: "L0999.K1.V1.A9F-S11")

Java class for sso complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="sso">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element name="property" type="{http://schemas.nmdp.org/spec/hml/1.0.1}property" maxOccurs="unbounded" minOccurs="0"/>
       </sequence>
       <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}string" />
       <attribute name="test-id">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             <minLength value="1"/>
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="test-id-source" type="{http://www.w3.org/2001/XMLSchema}string" />
       <attribute name="scores" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
     </restriction>
   </complexContent>
 </complexType>
 

Field Summary

Fields

Modifier and Type	Field and Description
protected String	locus
protected List<Property>	property
protected String	scores
protected String	testId
protected String	testIdSource

Constructor Summary

Constructors

Constructor and Description
Sso()

Method Summary

Methods

Modifier and Type	Method and Description
String	getLocus() Gets the value of the locus property.
List<Property>	getProperty() Gets the value of the property property.
String	getScores() Gets the value of the scores property.
String	getTestId() Gets the value of the testId property.
String	getTestIdSource() Gets the value of the testIdSource property.
void	setLocus(String value) Sets the value of the locus property.
void	setScores(String value) Sets the value of the scores property.
void	setTestId(String value) Sets the value of the testId property.
void	setTestIdSource(String value) Sets the value of the testIdSource property.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

property

protected List<Property> property

locus

protected String locus

testId

protected String testId

testIdSource

protected String testIdSource

scores

protected String scores

Constructor Detail

Sso

public Sso()

Method Detail

getProperty

public List<Property> getProperty()

Gets the value of the property property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the property property.

For example, to add a new item, do as follows:

    getProperty().add(newItem);
 

Objects of the following type(s) are allowed in the list Property

getLocus

public String getLocus()

Gets the value of the locus property.

Returns:

possible object is String

setLocus

public void setLocus(String value)

Sets the value of the locus property.

Parameters:

value - allowed object is String

getTestId

public String getTestId()

Gets the value of the testId property.

Returns:

possible object is String

setTestId

public void setTestId(String value)

Sets the value of the testId property.

Parameters:

value - allowed object is String

getTestIdSource

public String getTestIdSource()

Gets the value of the testIdSource property.

Returns:

possible object is String

setTestIdSource

public void setTestIdSource(String value)

Sets the value of the testIdSource property.

Parameters:

value - allowed object is String

getScores

public String getScores()

Gets the value of the scores property.

Returns:

possible object is String

setScores

public void setScores(String value)

Sets the value of the scores property.

Parameters:

value - allowed object is String