org.nmdp.ngs.sra

Enum LibraryStrategy

java.lang.Object

java.lang.Enum<LibraryStrategy>

org.nmdp.ngs.sra.LibraryStrategy

All Implemented Interfaces:

Serializable, Comparable<LibraryStrategy>

public enum LibraryStrategy
extends Enum<LibraryStrategy>

Library strategy.

Enum Constant Summary

Enum Constants

Enum Constant and Description
AMPLICON
BISULFITE_SEQ
CHIA_PET
CHIP_SEQ
CLONE
CLONEEND
CTS
DNASE_HYPERSENSITIVITY
EST
FAIRE_SEQ
FINISHING
FL_CDNA
MDB_SEQ
MEDIP_SEQ
MIRNA_SEQ
MNASE_SEQ
MRE_SEQ
NCRNA_SEQ
OTHER
POOLCLONE
RIP_SEQ
RNA_SEQ
SELEX
TN_SEQ
VALIDATION
WCS
WGA
WGS
WXS

Method Summary

Methods

Modifier and Type	Method and Description
static Map<String,LibraryStrategy>	byDescription() Return a map of library strategies keyed by description.
static LibraryStrategy	fromDescription(String description) Return the library strategy with the specified description, or null if no such library strategy exists.
String	getDefinition() Return the definition of this library strategy.
String	getDescription() Return the description of this library strategy.
static LibraryStrategy	valueOf(String name) Returns the enum constant of this type with the specified name.
static LibraryStrategy[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

WGS

public static final LibraryStrategy WGS

WGA

public static final LibraryStrategy WGA

WXS

public static final LibraryStrategy WXS

RNA_SEQ

public static final LibraryStrategy RNA_SEQ

MIRNA_SEQ

public static final LibraryStrategy MIRNA_SEQ

NCRNA_SEQ

public static final LibraryStrategy NCRNA_SEQ

WCS

public static final LibraryStrategy WCS

CLONE

public static final LibraryStrategy CLONE

POOLCLONE

public static final LibraryStrategy POOLCLONE

AMPLICON

public static final LibraryStrategy AMPLICON

CLONEEND

public static final LibraryStrategy CLONEEND

FINISHING

public static final LibraryStrategy FINISHING

CHIP_SEQ

public static final LibraryStrategy CHIP_SEQ

MNASE_SEQ

public static final LibraryStrategy MNASE_SEQ

DNASE_HYPERSENSITIVITY

public static final LibraryStrategy DNASE_HYPERSENSITIVITY

BISULFITE_SEQ

public static final LibraryStrategy BISULFITE_SEQ

EST

public static final LibraryStrategy EST

FL_CDNA

public static final LibraryStrategy FL_CDNA

CTS

public static final LibraryStrategy CTS

MRE_SEQ

public static final LibraryStrategy MRE_SEQ

MEDIP_SEQ

public static final LibraryStrategy MEDIP_SEQ

MDB_SEQ

public static final LibraryStrategy MDB_SEQ

TN_SEQ

public static final LibraryStrategy TN_SEQ

VALIDATION

public static final LibraryStrategy VALIDATION

FAIRE_SEQ

public static final LibraryStrategy FAIRE_SEQ

SELEX

public static final LibraryStrategy SELEX

RIP_SEQ

public static final LibraryStrategy RIP_SEQ

CHIA_PET

public static final LibraryStrategy CHIA_PET

OTHER

public static final LibraryStrategy OTHER

Method Detail

values

public static LibraryStrategy[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (LibraryStrategy c : LibraryStrategy.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static LibraryStrategy valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getDescription

public String getDescription()

Return the description of this library strategy.

Returns:

the description of this library strategy

getDefinition

public String getDefinition()

Return the definition of this library strategy.

Returns:

the definition of this library strategy

byDescription

public static Map<String,LibraryStrategy> byDescription()

Return a map of library strategies keyed by description.

Returns:

a map of library strategies keyed by description

fromDescription

public static LibraryStrategy fromDescription(String description)

Return the library strategy with the specified description, or null if no such library strategy exists.

Parameters:

description - description

Returns:

the library strategy with the specified description, or null if no such library strategy exists