| Class | Description |
|---|---|
| Analysis |
A SRA analysis object captures sequence analysis results including sequence alignments, sequence variations and sequence annotations.
|
| Analysis.AnalysisAttributes |
Java class for anonymous complex type.
|
| Analysis.AnalysisLinks |
Java class for anonymous complex type.
|
| Analysis.AnalysisRef |
Java class for anonymous complex type.
|
| Analysis.AnalysisType |
Java class for anonymous complex type.
|
| Analysis.AnalysisType.SamplePhenotype |
Java class for anonymous complex type.
|
| Analysis.AnalysisType.SequenceAnnotation |
Java class for anonymous complex type.
|
| Analysis.AnalysisType.SequenceAssembly |
Java class for anonymous complex type.
|
| Analysis.AnalysisType.SequenceVariation |
Java class for anonymous complex type.
|
| Analysis.Files |
Java class for anonymous complex type.
|
| Analysis.RunRef |
Java class for anonymous complex type.
|
| Analysis.SampleRef |
Java class for anonymous complex type.
|
| Analysis.StudyRef |
Java class for anonymous complex type.
|
| AnalysisFileType |
Java class for AnalysisFileType complex type.
|
| AnalysisFileType.Checklist |
Java class for anonymous complex type.
|
| AnalysisSet |
Java class for AnalysisSetType complex type.
|
| AttributeType |
Reusable attributes to encode tag-value pairs with optional units.
|
| IdentifierType |
Set of record identifiers.
|
| LinkType |
Reusable external links type to encode URL links, Entrez links, and db_xref links.
|
| LinkType.EntrezLink |
Java class for anonymous complex type.
|
| LinkType.UrlLink |
Java class for anonymous complex type.
|
| NameType |
Java class for NameType complex type.
|
| ObjectFactory |
This object contains factory methods for each
Java content interface and Java element interface
generated in the org.nmdp.ngs.sra.jaxb.analysis package.
|
| PipelineType |
The PipelineType identifies the sequence or tree of actions to
process the sequencing data.
|
| PipelineType.PipeSection |
Java class for anonymous complex type.
|
| PlatformType |
The PLATFORM specifies the sequencing platform.
|
| PlatformType.AbiSolid |
Java class for anonymous complex type.
|
| PlatformType.Capillary |
Java class for anonymous complex type.
|
| PlatformType.CompleteGenomics |
Java class for anonymous complex type.
|
| PlatformType.Helicos |
Java class for anonymous complex type.
|
| PlatformType.Illumina |
Java class for anonymous complex type.
|
| PlatformType.IonTorrent |
Java class for anonymous complex type.
|
| PlatformType.Ls454 |
Java class for anonymous complex type.
|
| PlatformType.PacbioSmrt |
Java class for anonymous complex type.
|
| ProcessingType |
Java class for ProcessingType complex type.
|
| QualifiedNameType |
Java class for QualifiedNameType complex type.
|
| ReferenceAssemblyType |
Reference assembly details.
|
| ReferenceAssemblyType.Custom |
Java class for anonymous complex type.
|
| ReferenceAssemblyType.Custom.UrlLink |
Java class for anonymous complex type.
|
| ReferenceAssemblyType.Standard |
Java class for anonymous complex type.
|
| ReferenceSequenceType |
Reference assembly and sequence details.
|
| ReferenceSequenceType.Sequence |
Java class for anonymous complex type.
|
| SequencingDirectivesType |
Java class for SequencingDirectivesType complex type.
|
| SpotDescriptorType |
The SPOT_DESCRIPTOR specifies how to decode the individual reads of interest from the
monolithic spot sequence.
|
| SpotDescriptorType.SpotDecodeSpec |
Java class for anonymous complex type.
|
| SpotDescriptorType.SpotDecodeSpec.ReadSpec |
Java class for anonymous complex type.
|
| SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable |
Java class for anonymous complex type.
|
| SpotDescriptorType.SpotDecodeSpec.ReadSpec.ExpectedBasecallTable.Basecall |
Java class for anonymous complex type.
|
| SpotDescriptorType.SpotDecodeSpec.ReadSpec.RelativeOrder |
Java class for anonymous complex type.
|
| UrlType |
Java class for URLType complex type.
|
| XRefType |
Java class for XRefType complex type.
|
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