org.nmdp.ngs.tools

Class DownsampleFastq

java.lang.Object

org.nmdp.ngs.tools.DownsampleFastq

All Implemented Interfaces:

Callable<Integer>

public final class DownsampleFastq
extends Object
implements Callable<Integer>

Downsample sequences from files in FASTQ format.

Constructor Summary

Constructors

Constructor and Description
DownsampleFastq(File inputFastqFile, File outputFastqFile, org.apache.commons.math3.distribution.BinomialDistribution distribution) Downsample sequences from files in FASTQ format.

Method Summary

Methods

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DownsampleFastq

public DownsampleFastq(File inputFastqFile,
               File outputFastqFile,
               org.apache.commons.math3.distribution.BinomialDistribution distribution)

Downsample sequences from files in FASTQ format.

Parameters:

inputFastqFile - input FASTQ file, if any

outputFastqFile - output FASTQ file, if any

distribution - binomial distribution, must not be null

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line args