org.nmdp.ngs.tools

Class GenerateBed

java.lang.Object

org.nmdp.ngs.tools.GenerateBed

All Implemented Interfaces:

Callable<Integer>

public final class GenerateBed
extends Object
implements Callable<Integer>

Generate records in BED format.

Constructor Summary

Constructors

Constructor and Description
GenerateBed(File bedFile, int n, int size, String chrom, org.apache.commons.math3.random.RandomGenerator random, org.apache.commons.math3.distribution.RealDistribution length) Generate records in BED format.

Method Summary

Methods

Modifier and Type	Method and Description
Integer	call()
static void	main(String[] args) Main.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenerateBed

public GenerateBed(File bedFile,
           int n,
           int size,
           String chrom,
           org.apache.commons.math3.random.RandomGenerator random,
           org.apache.commons.math3.distribution.RealDistribution length)

Generate records in BED format.

Parameters:

bedFile - output BED file, if any

n - number of BED records to generate, must be at least zero

size - chromosome size, must be at least zero

chrom - chromosome name, must not be null

random - random generator, must not be null

length - length distribution, must not be null

Method Detail

call

public Integer call()
             throws Exception

Specified by:

call in interface Callable<Integer>

Throws:

Exception

main

public static void main(String[] args)

Main.

Parameters:

args - command line arguments