Uses of Class
org.nmdp.ngs.variant.vcf.VcfRecord

Packages that use VcfRecord

Package	Description
org.nmdp.ngs.feature	Features.
org.nmdp.ngs.feature.parser	Feature parser.
org.nmdp.ngs.variant.vcf	Low-level VCF file parsing.

Uses of VcfRecord in org.nmdp.ngs.feature

Methods in org.nmdp.ngs.feature that return VcfRecord

Modifier and Type	Method and Description
VcfRecord	VcfFile.Iterator.next()

Uses of VcfRecord in org.nmdp.ngs.feature.parser

Methods in org.nmdp.ngs.feature.parser that return VcfRecord

Modifier and Type	Method and Description
static VcfRecord	FeatureParser.parseVcfRecord(String field, long lineNumber)

Uses of VcfRecord in org.nmdp.ngs.variant.vcf

Methods in org.nmdp.ngs.variant.vcf that return VcfRecord

Modifier and Type	Method and Description
VcfRecord	VcfRecord.Builder.build() Create and return a new VCF record populated from the configuration of this VCF record builder.

Methods in org.nmdp.ngs.variant.vcf that return types with arguments of type VcfRecord

Modifier and Type	Method and Description
static Iterable<VcfRecord>	VcfReader.records(File file) Read zero or more VCF records from the specified file.
static Iterable<VcfRecord>	VcfReader.records(InputStream inputStream) Read zero or more VCF records from the specified input stream.
static Iterable<VcfRecord>	VcfReader.records(Readable readable) Read zero or more VCF records from the specified readable.
static Iterable<VcfRecord>	VcfRecordParser.records(Readable readable) Read zero or more VCF records from the specified readable.
static Iterable<VcfRecord>	VcfReader.records(URL url) Read zero or more VCF records from the specified URL.

Methods in org.nmdp.ngs.variant.vcf with parameters of type VcfRecord

Modifier and Type	Method and Description
void	VcfStreamAdapter.record(VcfRecord record)
void	VcfStreamListener.record(VcfRecord record) Notify this listener of a VCF record.
static void	VcfWriter.writeRecord(List<VcfSample> samples, VcfRecord record, PrintWriter writer) Write VCF record with the specified print writer.

Method parameters in org.nmdp.ngs.variant.vcf with type arguments of type VcfRecord

Modifier and Type	Method and Description
static void	VcfWriter.write(VcfHeader header, List<VcfSample> samples, List<VcfRecord> records, PrintWriter writer) Write VCF with the specified print writer.
static void	VcfWriter.writeRecords(List<VcfSample> samples, List<VcfRecord> records, PrintWriter writer) Write VCF records with the specified print writer.